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AT3G15970.1

Arabidopsis thaliana [ath]

NUP50 (Nucleoporin 50 kDa) protein

16 PTM sites : 6 PTM types

PLAZA: AT3G15970
Gene Family: HOM05D003909
Other Names: NULL
Uniprot
Q9LW88

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
nt G 2 GDSDNAIPFS5
nta G 2 GDSDNAIPFSRKRTALKE167a
GDSDNAIPFSR118
119
GDSDNAIPFS5
ph S 4 GDSDNAIPFSR114
ac K 18 TALKELSR98a
98b
98c
98e
ub K 47 DNPGLDDDDEDTSALESGTFNTASKEVLASR40
ph T 66 SATAPPASNPFTGIR114
ph S 99 LVPFTAPAPSTAAAETTKPLSAGK114
ph S 121 ETDGDSKEKSDAIDAVGK114
ph S 125 EKSDAIDAVGKQETQGDEISAK114
ph T 136 SDAIDAVGKQETQGDEISAK114
ph S 142 QETQGDEISAK114
ph S 309 STETTTAFPSK88
114
so C 405 GITFACVNSVSDAK108
ph T 455 AVIEEHKDSKPSVAEAAAPLKTPENSPSAEDA48
85
DSKPSVAEAAAPLKTPENSPSAEDA83
84a
84b
85
94
111a
111b
111c
111d
114
ph S 459 AVIEEHKDSKPSVAEAAAPLKTPENSPSAEDA48
85
DSKPSVAEAAAPLKTPENSPSAEDA83
84a
84b
85
94
109
111a
111b
111c
111d
114
TPENSPSAEDA88
ph S 461 AVIEEHKDSKPSVAEAAAPLKTPENSPSAEDA48
DSKPSVAEAAAPLKTPENSPSAEDA111a
111b
111c
111d
114

Sequence

Length: 465

MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRRTDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLSAGKQETLADGRSDATKETDGDSKEKSDAIDAVGKQETQGDEISAKTKDIIDGGEKEMSEAVNSVEGGGAVNKNEDEIKTTMVTEVAAGEETVKDDNNNSNTVEGSDCVVKDTGGNQTEKEGKEGDGNEDTEKNGDSGALSSFHQHSSSKNAFTGLASTGFSASSFSFGLVPQEGSTGSGSEQSSFSFGQANNGNSSLFGASVATSITTKSTETTTAFPSKQDVSVETGEENEKAAFTADSVMFEYLEGGWKERGKGELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKTPENSPSAEDA

ID PTM Type Color
nt N-terminus Proteolysis X
nta N-terminal Acetylation X
ph Phosphorylation X
ac Acetylation X
ub Ubiquitination X
so S-sulfenylation X
Multiple types X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR000156 309 440
IPR015007 13 77

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
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